It appears that it’s hitting the rod end bearing because the modified W-00823-AP is bolted to the outside of the Sky Design bracket and it looks like there are square spacers standing it off even more. Is the Sky Design W-00823-AP (blue) bracket .063? That’s what the oem bracket is and might be why it’s hitting the screw when mounted against the servo, second picture.
I like the idea of the ball bearings in this design but they should have supplied that bracket with the square hole, as in the oem.
If you go with moving the rod end bearing to the outside, you’ll have to make a longer CS-00020 standoff.
I would remove the blue modified W-00823 and mount it to the adjacent rib. Its only purpose is to hold that connector. Or abandon the bracket, drill a couple small holes in the adjacent rib and tie wrap the connector to the rib. I’m not a fan of the longer CS-00020 standoff and the unnecessary leverage.
Did you use longer AN3 bolts to attach the servo? That’s a lot more stack up than the original .063 bracket.