I would be curious what Vans says.
The bulkheads on early RV kits 3,4,6, never fit very well. It took a lot of manipulation and sometimes shimming to get the flanges to lay flat without stress. It’s obvious to me that these were riveted under stress.
I do not believe there is a lot going on structurally with this part of the lower bulkhead. Vans or a more knowledgeable person should chime in.
Had this been caught earlier, stop drilling may have prevented propagation. That time has passed. I do not believe, with the sandwiched bulkhead, that repairing the flanges will be possible as you would be drilling through both bulkheads, but maybe. Replacing that bulkhead isn’t as big of a job as replacing the tailwheel stinger weldment and folks tackle that job.
Wait for Vans and others here to comment , but at first glance, I see two ready options: replace the bulkhead, or leave it as is.
I would thoroughly inspect the inner bulkhead and especially those securing the tailwheel weldment.