Dennis, the overlying covers are secured with #8 screws, so you need to machine countersink the #19 screw holes in the bulkhead side channel to accept the dimples of the covers. Figure 2 of 13-3 basically says "don't countersink too deep", just deep enough to accept the dimpled sheet above it. You can make a test dimple in a piece of scrap and fit it to your countersunk holes to see if they are deep enough.
In my opinion, the plans here are in error here in that the middle screw hole of the five in the bulkhead side channel should not be countersunk. There are two layers above it, with the top one being the lower flange of the mid-cabin deck, which is itself countersunk for the #8 screw. No need to have another countersink buried under it. You can read ahead in the plans and decide for yourself.
Good Luck, -Andy