That pod is looking better and better as you tweak.
One more possibly helpful comment:
If the pod closeout is not extended sufficiently far to fully prevent flow separation, then one probably wants to terminate the pod closeout with an abrupt, blunt, rectagular trailing edge (or in 3D, trailing face), rather than a rounded or ramp-like shape. (VG's a few inches upstream can extend the separation point farther around a turn, but what's shown here will presumably still separate at some location.)
Why an abrupt Trailing Edge?
What one does not want is a vague separation point. There may be some airspeed range where the flow separation is unstable, hence inducing loud vibration into the airframe. It would be better to close out the pod as much as possible without flow separation, then abruptly cut it off so the separation point is fixed at that location.
-Paragon
Cincinnati, OH