The gear mounts do share the wing spar attach bolts, but they are also secured to the center section as well as the lower longeron by additional bolts that are not shared with the spar.
I think mounting the gear with only the non-shared bolts should suffice at this stage of construction. They don't need to sustain landing loads or absorb bumps... just support the weight of the fuselage stationary on the ground.
And if you're still uncomfortable with this, you could install some temporary bolts in the spar attach locations (temporary because you'll have to remove them to install the wings). But if you do this, I would suggest:
1) As others have suggested, DON'T use the high tolerance bolts, because they'll be hard to remove without marring up the holes.
and
2) Either use a short bolt through only the forward bars of the center section, or use a full length bolt through both forward and aft bars and an accurately fitted spacer between them. Either way, point is, DON'T pull the center section bars together with the bolt with nothing between them, which could stress and damage the center section.
Anyway, I would think just the non-shared bolts should be fine. (That's what I'll be doing in a couple of weeks. So before I do, let me know how it works out for you
).