I recently accompanied a friend as we went to pick up an unmodified O-290 GPU and here is my observation:
The flange everyone talks about is a big round thing up by the prop hub. It is there so they could be bolted up to a dynamo (generator). They can be cut off w/o a problem, IMHO.
The prop flange is about the same but you will need the bolt bushings.
The accessory case had two openings for mags and "I think" both drive gears where in there. If not, I have a spare gear from my O-290-D2 that I can sell you.
They accessory case had the opening for a fuel pump, which my O-290-D2 did not and has since been replaced. The unit we picked up had a cover over the opening so I don't know if the proper gear and push pin were in there or not. I suspect not. Again, you can pick these items up on eBay.
The sump needs to be replaced as the GPU used an down draft carb, not an updraft.
For ignition I plan on using duel Pmags. The price isn't much more than slicks and I can use auto plugs, get a hotter spark, have electronic ignition, etc.
Parts can be found for the engine but they do require some searching. It seems to me that the engine is about 40% O-235, 40% O-320, and 20% O-290.
The most difficult part to find is the Marvel-Schebler MA 3SPA (10-3565-1) Part #: 62830 carburetor. Aircraft Spruce lists them but it turns out they neither have the core nor will they rebuild one if you have a core. Long story but they can be rebuilt. Contact me, if you find one and I'll give you the name of the FAA repair station that yellow tagged mine.
I bought my carb core from an airboat builder in FL that had a fresh overhaul. Don't believe them, it still had the composite float in it which was replaced when it was yellow tagged.
The other carb option is to use one from a Continental O-300 Marvel-Schebler MA 3SPA (10-4895) TCM Part #: 633029. I have heard they actually work better than the carb spec'ed out by Lycoming. The difference seems to be jetting, venture size, and maybe a few other small parts.
There are some pictures of my engine on my web site listed below.
Good luck!