I ran the left side wires with the throttle cables, that is: under the throttle console, arm rest, rear throttle console cover and armrest. That's the same area the manual trim contol cable goes. My flap motor wires go there. In fact my flap control switch is to the left or the trim knob, so I can hold the trim knob and operate the flap switch between my knuckles. The idea being a firm hand hold on the knob while operating the flap swith, then a quick twist of the knob to adjust the trim accordingly.
I'm also runing wire down the right side, more in fact, because the right console is where most of us locate the switch panel.
The side consoles have good access after the A/C is built. You can sit in the seat and work, sure would beat having to pull up the floors and stand on your head later.
I think headphone wires, oxygen connection and suit heat power should all be together on the left side. Right side Aux power is for GPS, computers, video cams, whatever, that are not attached to the pilot / pax.
It's my thought on reducing tangling of wires in the cockpit.