I stole a system I saw used by an avionics shop.
3 segment number (aaa-bb-cc)
aaa = a 2 to 4 alphanumeric that identifies the system (ie STB for strobe or COM1 for primary radio) Use what works for you.
bb = wire number. I started with 01 for power and followed with ground and then signal
cc = wire size such as 20 or 22 etc.
Example for Pitot
PIT-01-14 (from fuse block to switch)
PIT-02-14 (from switch to Pitot)
PIT-03-14 (Pitot to ground)
Example for SL40
COM2-01-20 (Power)
COM2-02-20 (Gnd)
COM2-03-22 (Mic Gnd)
COM2-04-22 (Serial In)
Etc
Of course, these are pretty much useless without a schematic that shows wire numbers and connection locations but together they are great.
I wired all my avionics stack and of course the DC power switching. On test, I found only one wire in the wrong DSUB hole on the XPDR and it was easy to debug and fix with the wire numbers and schematics. ( I was in the hole on the wrong side of the DSUB hole number )
In regards to avionics schematics, when I started, I tried to make one big master avionics schematic. DON'T. Its TOO complicated.
Make a single drawing for each component. The component in question is on the left side of the drawing ( a list of pin numbers with discription
) and the connected pieces are on the right with the wires running left to right. Start with power at the top.
Yes, there will be duplicate information on the multiple drawings but I can assure you that it is simpler to manage and use than a huge "master" with convoluted wires running everywhere on the page.
In regards to wire color, I chose to use yellow for any wire that was hot and not switched such as battery buss items. Red for switched power and black for ground. White for signal.
Good Luck! For me this was about 25% of the overall project time and effort but very rewarding.