For the low levels of water that we would normally see dissolved in fuel, it won't be a problem. The dissolved water will have a freezing point significantly depressed below normal, and if you did get cold enough it would freeze out into small crystals which would not coagulate, they would settle out to the bottom of the tank. That does raise the possibility of plugging a fuel filter - but if the level of water was high enough to reach this point anyway, you would have likely caught it during your preflight drain check.
The best solution is to keep fresh seals on your fuel caps - change them at the annual condition inspection. This will prevent rainwater or washwater from entering the tanks, and that will be 99.9% of the water contamination problem licked.
There are many opinions for and against building an aircraft that is ethanol tolerant. There is no shortage of individuals posting on here that will tell you it's not safe and you're going to die, immediately if not sooner, if ethanol ever comes within 200 yards of your aircraft. Make your own decisions for your own reasons. I have and do, and when people try to talk me out of it, I just shrug my shoulders and walk away. Build YOUR airplane the way YOU see fit and don't let the other guys tell you differently. A certain comfort level with experimentation and the subject matter involved is required any time you go off-plan, but I would offer to the table that with all the mogas STC's out there and the increasing number of aircraft running ethanol mogas, E85, and straight ethanol, it is not impossible, it's not even necessarily dangerous if done right - it's just off-plan. Do the research, understand the challenges, and build it according to your comfort level.
I offer only advice, never direction.
Why? Are you concerned that water dissolved in the ethanol is going to corrode the aluminum? That's a little hard to imagine. I'm no chemist, but I have a hunch that that the same ionic action that allows alcohol to keep water suspended probably prevents that suspended water from interacting with metal.
Not so, I'm afraid. If that was the case, there would be no corrosion difference between pure clean water and salt water. The ionic suspension action between the water in the alcohol in the fuel and the salt in the seawater is the same process.