I guess we just clean 'em.
After reading and re-reading the posts here, and after discussing our problem with the manufacture (Pittman), here are my conclusions. Pittman tells me (and I have no reason to disbelieve them) that they ship thousands of these motors monthly and our problem is no known problem in any other application. From that I hypothesize that our problem stems from the mating of the motor with the jackscrew and the jackscrew's habit of forcing grease up into the motor. I know that the first time we had the motor failure I cleaned a significant amount of grease from around the armature, and commutator and brushes. The two times since then that I have cleaned the motor the brushes and commutator were very dirty - I now assume that I was not aggressive enough in removing the guck (technical term) so this last time I soaked the brush carrier plate in MEK, used scotch bright on the commutator and a pick to clean out the gaps between the commutator segments. We shall see how that all works out.
Just a comment on the successful trouble-free flights. I think it takes about 10 seconds for the flaps to deploy fully. Assume half-hour flights, three hundred hours of flying means the flaps were fully deployed 600 times for about 6,000 seconds, or 100 minutes - a bit over an hour and a half. I don't think that is anywhere near the trouble-free operation we should expect from those motors, especially as an intermittent operation where heat should not be a factor.
Thanks to all who are helping with finding a permanent solution to this irksome problem.
David