My experience was that if I dimpled, I didn't have to order special rivets and the dimples actually ensured that the nutplate was aligned properly with the screw hole. There's a surprising amount of 'slop' when drilling standard size holes for rivets; by using the dimple method, I found that the nutplate would 'self-align' more effectively than using a screw in the hole. As a bonus, it's actually faster for me than messing with an alignment screw. And (not that it's that big a factor) it's a stronger attachment than a countersunk hole.
Charlie