It all depends on your application (Air box) and type of flying.
There are two air-boxes and two kinds of induction.
The standard FAB (filtered air box) is for Carb or FI mounted vertically.
The VAB (vertical air box) is for FWD FACING (horz) FI (fuel injection). The filter in the right cowl inlet is out in the open all the time.
For FAB if you have carb you (MUST) put in carb heat. This of course does not bypass the air-filter but does protect it from outside contaminates (sleet and snow). Carb Heat just closes off the cowl air-scoop and takes air from the cowl area, which is hotter or at least warmer.
The FAB alternate air is optional per Vans instructions and needed mostly for flying in snow and ice. Why you would fly in snow and ice I don't know, the RV is not known ice approved or very smart in a small plane. You can always close the carb heat to avoid "impact ice or snow" from blocking the filter.
The FAB magnetic alternate air was optional for the FAB per vans instruction. It was designed to open automatically but is OBSOLETE. Van changed the FAB alternate air from magnetic latch to cable operated a few years ago. The problem with the magnetic alternate air latch was it was open all the time. Also the small rivets that attached it could come lose and go into your engine.
Once you open the cable alternate air, you can not close it, at least easily with the cable from what I see of the design (I have the parts but not installed). You have to get on the ground and manually latch it back into the holder which is tight. The alternate air draws unfiltered air under the FAB.
For VAB (vertical air box) for the fwd face injection, alternate air is cable operated and opens a door on the side of the snorkel/airbox that goes from the filter to FI body. Since there is no Carb Heat and the filter is out in the open air, I think alternate air would be a good idea with the VAB.
I have a FAB and installed carb heat (I have a Carb) but did not install alternate air (magnetic automatic or cable operated). The reason is I doubt the filter will be blocked with my flying and knowing the limitation. I will have to remember to use carb heat in heavy (freezing?) precipitation.
IF YOU HAVE VAB OR FLY IFR IN SNOW OR SLEET (bad idea anyway) THAN YOU COULD BLOCK THE FILTER. I recall this is the reason for the option.
Summary my suggestions
FAB - Install at least, Carb heat for Carb and for FI Carb Alternate Air or carb heat, either one. If you have a Carb I would say Carb Heat is a MUST!
VAB - Install the Alt Air. Why not. If flying VFR and do Arco only, you can leave it off but that is up to you. It is unlikely the air filter will be totally blocked.
If you are fair weather flyer you don't need Alternate Air in my opinion, but I would put it on the VAB since the filter is right out there to be blocked and there is no carb heat or "alt air" with the VAB.