I personally don't know if it's possible to overdimple something. Dimple dies will not bend the metal more than necessary for a rivet to sit flush in them. Once the dies close all the way, you're just pressing metal.
As mentioned above, dimpling does stretch the metal and there is almost always some very slight arching of parts. It's impossible to think that there will not be a fluting effect at all on the metal. You're bending the metal by dimpling it...plain and simple. You'll especially notice this on the longer parts. The more holes there are, the more 'flutes' there are and the more bend you're going to have over the length of the part.
How about sitting your spar on a flat surface with the bow in the center and tell us how much it bowed? This could help you quantify the problem.