The EGT and CHT wires together will be fine but I would not run them next to (or even near to) spark plug wires. I had a problem with jumpy EGT readings at first and fixed it by getting farther away from a plug wire.
With good-quality filtered differential signal conditioning for the thermocouples it probably won't be a problem, but best practice is to minimize routing them parallel to the plug wires.
You can bundle engine sense wires together. Probably not a good idea to route these wires with higher power items, like main bus feed, master or start wires, or any large wires that carry a lot of current. I have only two firewall penetrations in my firewall that carry wires.