the way to reduce leakage
Following Dan's observation, the way to minimize leakage is to have the seals rest on the interior of the air box intake and the exterior of the cowl snout. This is equivalent to the way the seals go on the cowl cooling lip to baffle intake floor. The idea is that the higher pressure tends to make the seal 'seat' against the inside of the air box intake and reduce leakage.
Another method you might try - and here I'm not that familiar with the detailed geometry, so if it can't work, discard the suggestion - but mouse pad neoprene foam, or an old wet suit, can provide a somewhat stretchy rubber seal that you can make fit tight on the mating surfaces so it doesn't leak. In this case, I think you can get away with making a seal that stays on the exterior of the air box intake, because it is pre-tensioned (stretched) slightly onto the surfaces and seals pretty well. this works really well on round ram-air intakes.