But all aluminum alloy is not made equal. 2024 needs the cladding to stop it disolving away before your 2nd annual, but 3003, 5005 or even 5052 does not need that protection because of the different alloying elements.
Pure aluminum (1100) does not need any protection, but is soft - add 4% copper (2024) and it is now a useful structural alloy, but corrodes. Add manganese instead of copper (3003) and there is some strength improvement over pure Al (20%) with little loss of corrosion resistance. Add magnesium rather than manganese (5005) and the alloy stands up in service better. 5052 has a few other minor alloying elements (such as silicon and iron, and chromium) but still has similar properties of good corrosion resistance, particularly in a marine environment, good workability (you can bend the tube without it crimping or cracking) and reasonable strength.
Fittings are anodized to identify the material they are made from as much as for corrosion protection. If you feel the need to alodine the outside of your fuel pipes, then go ahead. There is no need to do it, but no real penalty other than the time it takes. I would advise against alodining the inside of the fuel pipes as a strontium chromate primer is really required to withstand the fuel, and that is not generally available.
Pete