Obviously you will need to go back to the beginning and start from scratch.

Sorry, just kidding.
I do remember that this skin was one of the few that was "tight" to assemble on my craft.
I'll suggest some techniques that may help you.
1) You can check one side at a time by clecoing into the longeron first and then trying to cleco the firewall and subpanel bulkhead. Its certainly not an install method but it may tell you something new.
2) Pre bend the panel. Carefully (so you don't kink it) roll it to instill the two curves into the panel. I did not get much of a curvature to "stick" but anything helped.
3) When cleco'ing from the center, don't put all the clecos into the curved sections. I know you can't get the longeron clocos in without some help from a couple of clecos in the curved section but keep them to a minimum such that you can still move the panel fwd and bwd at the longeron.
4) Focus on getting the AN4 holes lined up.
5) And lastly, I know on one occation (I remember one post in 7 years) a builder got new sheet and cut a new skin using the current prepunched part as a guide and left out the problem holes for drilling in place on the craft. Good luck in your endeavor to avoid this step.
An afterthought...Do you have shims on top of the subpanel bulkhead curves? These would move the longeron holes in the skin rearward.