Here's what I did (A model) and why:
I drilled two 1/4 drain holes at the low point of my fuse (below the seat area in the center tunnel). I inspected the aft bulkheads, and they all have flutes that will allow water to drain forward to this point. I drilled holes in pairs, thinking that if the airplane was not level, this would be more effective.
Then, I did the same thing directly below the fuel selector valve. Besides water, this will drain fuel in the event of a fuel leak in the area.
I fabricated small fairings to fit over the holes and bonded them on the underside of the fuse. Inside, I bonded on some stainless screen (from a faucet filter).
The fairings act to provide a slight vacuum in flight, pulling any liquid out. They also prevent any oil or exhaust from entering.
One other thing I did: right below the steps on my '9A', I left a small opening. (rather than sealing tight) This provides some outboard drain holes.
I didn't do anything special for the wings. Most of the water would work its way to the wing root and out at the root fairing.
I'd expect most water accumulation would occur if the aircraft was sitting on the ramp. I hangar mine, but sometimes fly in the rain (Vancouver BC area).
Vern
