Alignment is everything
When I did my "Big Cut", I trimmed all the fore, aft and sides enough that the canopy sat down against the roll bar and fore and aft where I wanted it for just that reason. The cut has an angle to it to match the roll bar and if the front or rear drops more than the other end it will move the line.
That said, when I did mine I still ended up with a very minor (like an 1/8 to 1/4 inch IIRC) gap and it was easy to match it up doing what you suggest.
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Roger Whittier
RV7A Quick Build, Tip Up
N1MY Reserved - Canopy finished - Wings mated, Engine hung, electrical 95%
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