Matt,
I'm sure you've read on this forum all the "gotchas" about how the struts move and shift the frame so that the forward canopy skin wants to grab the forward top-deck skin... just watch out there when you open it, so it doesn't reward you with a loud "SNAP" and bend your fwd edge. Also, the fit of the canopy frame to the fuselage will change a bit, and most builders it seems, end up chasing their tail trying to get the gaps to line up. As one builder told me, "Nothing's final 'til you rivet on the forward top skin."
As for the alternate location of the struts - I saw this at on a -7 once and liked how clean it looked. You basically install the canopy frame end per instructions, but instead of making the "dog house" piece for the fuselage end, you drill and mount it right into the canopy side decks. I even used the 1/8" spacer behind the decks to spread the twisting load along the deck. Works great! No twisting, bulging, or distortion of any sort, and the strut does not contact the deck when the canopy is closed (it's close... but absolutely doesn't touch).
