Dan,
The quickest and cheapest way to get back in the air is to just buy another Van's 14684 60A alternator. Advance Auto sells them (say you have a 1990 Suzuki Samari, p/n 14684A) for $88, and if you use the "Order Online, Pickup In Store" option, with the coupon code TRT30 (30% off $50+) to bring the cost down to $62. There is a $22 core charge that you'll get back. You'll have to swap the pulleys (use an impact wrench) to remove and install the old pulley nuts.
To prevent this from happening again, invest in a B&C Over-Voltage protector (
http://www.bandc.aero/over-voltageprotectionmodule.aspx) for $40.
If I was to build over again, I'd go with buying a B&C alternator. However, it's too much hassle to install it now with it's separate external regulator. Plus...it's sort of nice having an alternator I can source at almost any auto-parts store!
Shoot me an email if you have any questions.