How is he battery connected to the bus? It should be battery + directly to the master solenoid and then everything else on the other side of the master solenoid. Also, the master solenoid should use a ground connection to complete the circuit. When you flip the master Switch, do you hear it click? Check voltage on the bus side of the solenoid with the master switch off and it should read nothing.
Do you have a diode on the master solenoid? Is it installed correctly?
Was the engine running? As rv9av8tr said, sometimes the alternator will power the bus even without the battery connected. This is not a good thing. Never try that.
My guess is that there is some kind of E-bus setup that bypasses the master solenoid and that was not disconnected or turned off. If the master solenoid is, in fact, bad, then this would cause what you are seeing. Just the alt field will draw 3-5 amps even with the engine not running, which will drain your battery overnight.
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Jesse Saint
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