Hardly anyone will notice. Probably no one else will ever see it. There will be plenty of these types of cases. I won't even call them mistakes.

Just turn that pushrod, so that the rivet is out of view..........if you must.
I wouldn't even think of doing them again. Just look at many commercial built aircraft, where many rivets seem to be stuck un-evenly between the others.
I only replaced pushrods, when I was "stupid" and went by plan dimensions, instead of actual required lengths.
BTW, I'm installing a Tru-Trak altitude autopilot, located by the elevator bellcrank just behind the baggage compartment. If the plate that mounts the servo was installed when originally building the airplane, I'd rivet it on, with the orginal rivet pattern of the structure it attaches too.
But, there is no way, I'll drill out a bunch of existing well formed rivets. I'll simply drill holes in this bracket to allow the orginal rivet heads to poke through, and then add new rivets in between. This will look different than some other installations, but will be just as strong, and work just as well!
L.Adamson ---RV6A