Brian,
I went with powder coated overlays on my panel redo a few years ago, but did not have the anodized option at the time, so can't compare. However, I'm very happy with the PC's durability so far. You may have already done this, but one test you might try on each sample is pretend you just slipped off a screw head with a screwdriver or allen (sp?...hex) wrench, across the material, and see which one holds up better. Touch each with a greasy hand or finger (not that you'd ever do
that while working on the plane!
) and see how each cleans up.
The local outfit I used also powder coated the heads of the countersunk screws I use to attach the panel overlays, and that makes the screws blend in a bit, if that is a look you'd like (some like contrast, which can also be nice). Anodizers may be able to do that too, so it may or may not be a discriminator.
FWIW, my overlays were powder coated after cutting and drilling, and I've had no issues with panel fit or screw fit.
A trophy engraver laser-engraved the lettering after powder coating (through tape), and we filled them with rattle can black...low tech, but happy with the way it turned out.
Hope all this adds value to the project! Have fun...its a fun and gratifying project, as you know!
Cheers,
Bob