When I removed my flop tube several years ago, I simply capped the bulkhead fitting with a standard AN-6 cap.
https://www.anplumbing.com/adapters/caps-plugs.html
No sealant is needed for AN fluid fitting joints. (Obviously, you still need to seal the pass-through point of a bulkhead fitting, but nothing is needed where the fittings mate to each other.)
As long as the bulkhead fitting isn't leaking where it passes through the end rib, just cap it. I capped mine on the outside of the tank. Don't forget to stabilize the bulkhead fitting with another wrench when you remove the flop tube, and when you cap it. You don't want to risk twisting the bulkhead fitting in the rib, which could break the proseal seal and/or loosen the nut on the fitting.
Charlie