It is not going to be much of an issue. Those holes will have to get dimpled anyway but after you fit the fiberglass cap. When it is dimpled prior, it will not help with the fitting as well or as easy.
Did you dimple them with #40 or #30?
I suggest to leave them as they are and fit your cap. If it is with number 40, you will need to re-dimple them with #30 but do it after all the fit is complete.
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Mehrdad
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