Root fairing - Metal=Simple, neat, light and faster
A fiberglass wing root fillet fairing will require more holes, including holes in the side of the fuselage above the wing. The simple stock wrap around wing root fairing is quicker to build and gives a neat installation.
You would think a fillet root fairing would help, being "swoopy" or aerodynamic. The design of a root fairing is very special topic in "Interference drag", and my guess is an effective root fairing would be much large and extend well aft to do anything. What little gain there is to be had (1 mph?), if any, even with a perfect fairing, could be negated by the additional drag from installation fit and finish. The fiberglass flange / lip between the fairing and fuselage, fiberglass being thicker than sheet metal, may hurt you from a drag and a visual stand point, if there is any fit problem. Long flat fiberglass edges tend to warp overtime between attachments becoming ugly and more draggy.
The simple stock wing root fairing are faster than fiberglass fairings tried before. Tracy Saylor tried a fiberglass fairing on his very fast RV-6 (first place Sun-N-Fun 100, 100hp RV class). After installing the fiberglass root fairing, he lost speed and returned to the simple wrap around fairing. If anyone can get speed out of a mod or install a fairing well, Tracy can. So that was all I needed to hear. He is not the only one who has noted a loss in speed with fillet root fairings.
If you do want a fillet fairing, do it for looks only, but I like the looks of the stock fairing way better. The simple metal wrap around/rubber seal fairing: looks clean, light, last a long time (durable) and installation requires less holes in the fuselage (just one or two on the bottom aft end).
Since you will want to remove the root fairing, you will need screws and nut plates. To make a fiberglass thick enough for screws will make it thicker and more obvious. You may need it thicker still to avoid future warping. The flat aluminum fairing is real simple, durable and has neat visual appearance.
Cheers George